PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.92GX5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YB
Protein Properties Length: 179aa    MW: 19447.7 Da    PI: 6.9615
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.92GX5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.21.2e-5819114297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+yveplkvyl+kyre+ege+
  Araip.92GX5  19 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHKYREMEGER 114
                  89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-5514116IPR009072Histone-fold
SuperFamilySSF471132.64E-4121122IPR009072Histone-fold
PfamPF008083.7E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-215270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-217189No hitNo description
PRINTSPR006151.8E-2190108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAESDNESGG QGGNTSEFRE QDRFLPIANV SRIMKKALPA NAKISKEAKE TVQECVSEFI  60
SFITGEASDK CQKEKRKTIN GDDLLWAMTT LGFEEYVEPL KVYLHKYREM EGERTALIGG  120
TRQHAGADQS NDGGAGGGGG MVPSHIMMMM GHQHQHQSHG HMFGSGGGTG SASSRRITR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4919109292Transcription factor HapC (Eurofung)
4g92_B3e-4919109292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311588e-98KT031158.1 Glycine max clone HN_CCL_197 CCAAT transcription factor (Glyma15g12570.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958968.11e-115PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-72NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A151R1B19e-85A0A151R1B1_CAJCA; Nuclear transcription factor Y subunit B-3
STRINGGLYMA15G12570.18e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-72nuclear factor Y, subunit B3